Getting Started
===============



To access the Gadi system, follow these steps:

1. **SSH into the Gadi system**:

    .. code-block:: console
        :linenos:

        ssh -XY <nci username>@gadi.nci.org.au


    Alternatively, you can use the Gadi terminal option at `ARE <https://are.nci.org.au>`_.

2. **Change to the project directory**:

    .. code-block:: console
        :linenos:

        cd /scratch/vp91
    

3. **Create and navigate to a directory with your username**:

    .. code-block:: console
        :linenos:

        mkdir -p $USER
        cd $USER
   

4. **Clone the repository**:

    .. code-block:: console
        :linenos:

        git clone https://github.com/NCI900-Training-Organisation/intro-to-parallel-programming.git
        cd intro-to-parallel-programming


In the repository:

- The `python/src` directory contains all the Python code.
- The `python/job_scripts` directory includes all the PBS job scripts.
- The `python/job_scripts/sample_outputs` directory holds the sample outputs.